All modules for which code is available

• nighres.brain.dots_segmentation
• nighres.brain.extract_brain_region
• nighres.brain.filter_stacking
• nighres.brain.mgdm_segmentation
• nighres.brain.mp2rage_dura_estimation
• nighres.brain.mp2rage_skullstripping
• nighres.cortex.cruise_cortex_extraction
• nighres.data.download_data
• nighres.filtering.filter_ridge_structures
• nighres.filtering.recursive_ridge_diffusion
• nighres.filtering.total_variation_filtering
• nighres.intensity.background_estimation
• nighres.intensity.flash_t2s_fitting
• nighres.intensity.intensity_propagation
• nighres.intensity.lcpca_denoising
• nighres.intensity.mp2rage_t1_mapping
• nighres.intensity.phase_unwrapping
• nighres.io.io_mesh
• nighres.io.io_volume
• nighres.laminar.laminar_iterative_smoothing
• nighres.laminar.profile_sampling
• nighres.laminar.volumetric_layering
• nighres.microscopy.mgdm_cells
• nighres.registration.apply_coordinate_mappings
• nighres.registration.embedded_antsreg
• nighres.registration.generate_coordinate_mapping
• nighres.shape.levelset_fusion
• nighres.shape.topology_correction
• nighres.statistics.segmentation_statistics
• nighres.surface.levelset_to_mesh
• nighres.surface.levelset_to_probability
• nighres.surface.probability_to_levelset
• nighres.surface.surface_mesh_mapping