download_data¶
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nighres.data.
download_7T_TRT
(data_dir, overwrite=False, subject_id='sub001_sess1')[source]¶ Downloads the MP2RAGE data from the 7T Test-Retest dataset published by Gorgolewski et al (2015) [1]_
Parameters: - data_dir (str) – Writeable directory in which downloaded files should be stored. A subdirectory called ‘7T_TRT’ will be created in this location.
- overwrite (bool) – Overwrite existing files in the same exact path (default is False)
- subject_id ('sub001_sess1', 'sub002_sess1', 'sub003_sess1'}) – Which dataset to download (default is ‘sub001_sess1’)
Returns: Dictionary with keys pointing to the location of the downloaded files
- inv2 : path to second inversion image
- t1w : path to T1-weighted (uniform) image
- t1map : path to quantitative T1 image
Return type: Notes
The full dataset is available at http://openscience.cbs.mpg.de/7t_trt/
References
[1] Gorgolewski et al (2015). A high resolution 7-Tesla resting-state fMRI test-retest dataset with cognitive and physiological measures. DOI: 10.1038/sdata.2014.
Examples using nighres.data.download_7T_TRT
¶
Examples using nighres.data.download_DTI_2mm
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nighres.data.
download_DOTS_atlas
(data_dir, overwrite=False)[source]¶ Downloads the statistical atlas presented in [1]_
Parameters: Returns: Dictionary with keys pointing to the location of the downloaded files
- fiber_p : path to atlas probability image
- fiber_dir : path to atlas direction image
Return type: References
[1] Bazin et al (2011). Direct segmentation of the major white matter tracts in diffusion tensor images. DOI: 10.1016/j.neuroimage.2011.06.020