levelset_fusion¶
-
nighres.shape.levelset_fusion(levelset_images, correct_topology=True, topology_lut_dir=None, save_data=False, overwrite=False, output_dir=None, file_name=None)[source]¶ Levelset fusion
Creates an average levelset surface representations from a collection of levelset surfaces, with same avearage volume and (optionally) spherical topology
Parameters: - levelset_images (niimg) – List of levelset images to combine.
- correct_topology (bool, optional) – Corrects the average shape to ensure correct topology (default is True)
- topology_lut_dir (str, optional) – Path to directory in which topology files are stored (default is stored in TOPOLOGY_LUT_DIR)
- save_data (bool, optional) – Save output data to file (default is False)
- overwrite (bool, optional) – Overwrite existing results (default is False)
- output_dir (str, optional) – Path to desired output directory, will be created if it doesn’t exist
- file_name (str, optional) – Desired base name for output files with file extension (suffixes will be added)
Returns: Dictionary collecting outputs under the following keys (suffix of output files in brackets)
- result (niimg): Levelset representation of combined surface (_lsf-avg)
Return type: Notes
Original Java module by Pierre-Louis Bazin
