All modules for which code is available
- nighres.brain.dots_segmentation
- nighres.brain.extract_brain_region
- nighres.brain.filter_stacking
- nighres.brain.intensity_based_skullstripping
- nighres.brain.mgdm_segmentation
- nighres.brain.mp2rage_dura_estimation
- nighres.brain.mp2rage_skullstripping
- nighres.cortex.cruise_cortex_extraction
- nighres.data.download_data
- nighres.filtering.filter_ridge_structures
- nighres.filtering.multiscale_vessel_filter
- nighres.filtering.recursive_ridge_diffusion
- nighres.filtering.total_variation_filtering
- nighres.intensity.background_estimation
- nighres.intensity.flash_t2s_fitting
- nighres.intensity.intensity_propagation
- nighres.intensity.lcat_denoising
- nighres.intensity.lcpca_denoising
- nighres.intensity.mp2rage_t1_mapping
- nighres.intensity.mp2rageme_pd_mapping
- nighres.intensity.phase_unwrapping
- nighres.intensity.t2s_optimal_combination
- nighres.io.io_mesh
- nighres.io.io_volume
- nighres.laminar.laminar_iterative_smoothing
- nighres.laminar.laminar_regional_approximation
- nighres.laminar.profile_averaging
- nighres.laminar.profile_meshing
- nighres.laminar.profile_sampling
- nighres.laminar.volumetric_layering
- nighres.microscopy.mgdm_cells
- nighres.microscopy.stack_intensity_regularisation
- nighres.registration.apply_coordinate_mappings
- nighres.registration.embedded_antsreg
- nighres.registration.generate_coordinate_mapping
- nighres.registration.simple_align
- nighres.segmentation.conditional_shape
- nighres.segmentation.fuzzy_cmeans
- nighres.shape.levelset_fusion
- nighres.shape.simple_skeleton
- nighres.shape.topology_correction
- nighres.statistics.segmentation_statistics
- nighres.surface.levelset_to_mesh
- nighres.surface.levelset_to_probability
- nighres.surface.mesh_to_levelset
- nighres.surface.probability_to_levelset
- nighres.surface.surface_inflation
- nighres.surface.surface_mesh_mapping
- nighres.surface.surface_som_mapping
- nighres.surface.volume_som_mapping