stack_intensity_regularisation¶
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nighres.microscopy.
stack_intensity_regularisation
(image, ratio=50, save_data=False, overwrite=False, output_dir=None, file_name=None)[source]¶ Stack intensity regularisation
Estimates an image-to-image linear intensity scaling for a stack of 2D images
Parameters: - image (niimg) – Input 2D images, stacked in the Z dimension
- ratio (float, optional) – Ratio of image differences to keep (default is 50%)
- save_data (bool) – Save output data to file (default is False)
- overwrite (bool) – Overwrite existing results (default is False)
- output_dir (str, optional) – Path to desired output directory, will be created if it doesn’t exist
- file_name (str, optional) – Desired base name for output files with file extension (suffixes will be added)
Returns: Dictionary collecting outputs under the following keys (suffix of output files in brackets)
- result (niimg): The intensity regularised input
Return type: Notes
Original Java module by Pierre-Louis Bazin.