release-1.1.0b1
Getting started
Installing Nighres
Nighres usage examples
Modules and Functions
Brain
Cortex
Data
Filtering
Intensity
Input/Output
Laminar
Microscopy
Registration
Shape
Statistics
Surface
Good to know
Data handling and formats
Saving outputs
Levelsets
Developer's guide
Overview
Setting up
Wrapping an existing CBS Tools class
Adding a new Python function
Writing examples
Adapting the docs
Making a Pull Request
Nighres
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Index
A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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P
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R
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S
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T
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V
A
apply_coordinate_mappings() (in module nighres.registration)
B
background_estimation() (in module nighres.intensity)
C
cruise_cortex_extraction() (in module nighres.cortex)
D
download_7T_TRT() (in module nighres.data)
E
embedded_antsreg() (in module nighres.registration)
embedded_antsreg_2d() (in module nighres.registration)
extract_brain_region() (in module nighres.brain)
F
filter_ridge_structures() (in module nighres.filtering)
filter_stacking() (in module nighres.brain)
flash_t2s_fitting() (in module nighres.intensity)
G
generate_coordinate_mapping() (in module nighres.registration)
I
intensity_propagation() (in module nighres.intensity)
L
laminar_iterative_smoothing() (in module nighres.laminar)
lcpca_denoising() (in module nighres.intensity)
levelset_fusion() (in module nighres.shape)
levelset_to_mesh() (in module nighres.surface)
levelset_to_probability() (in module nighres.surface)
load_mesh_data() (in module nighres.io)
load_mesh_geometry() (in module nighres.io)
load_volume() (in module nighres.io)
M
mgdm_cells() (in module nighres.microscopy)
mgdm_segmentation() (in module nighres.brain)
mp2rage_dura_estimation() (in module nighres.brain)
mp2rage_skullstripping() (in module nighres.brain)
mp2rage_t1_mapping() (in module nighres.intensity)
P
phase_unwrapping() (in module nighres.intensity)
probability_to_levelset() (in module nighres.surface)
profile_sampling() (in module nighres.laminar)
R
recursive_ridge_diffusion() (in module nighres.filtering)
S
save_mesh_data() (in module nighres.io)
save_mesh_geometry() (in module nighres.io)
save_volume() (in module nighres.io)
segmentation_statistics() (in module nighres.statistics)
simple_align() (in module nighres.registration)
surface_mesh_mapping() (in module nighres.surface)
T
topology_correction() (in module nighres.shape)
total_variation_filtering() (in module nighres.filtering)
V
volumetric_layering() (in module nighres.laminar)
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