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Getting started

  • Installing Nighres
  • Nighres usage examples

Modules and Functions

  • Brain
    • dots_segmentation
    • extract_brain_region
    • filter_stacking
    • intensity_based_skullstripping
    • mgdm_segmentation
    • mp2rage_dura_estimation
    • mp2rage_skullstripping
  • Cortex
  • Data
  • Filtering
  • Intensity
  • Input/Output
  • Laminar
  • Microscopy
  • Registration
  • Segmentation
  • Shape
  • Statistics
  • Surface

Good to know

  • Data handling and formats
  • Saving outputs
  • Levelsets

Developer's guide

  • Overview
  • Setting up
  • Wrapping an existing CBS Tools class
  • Adding a new Python function
  • Writing examples
  • Adapting the docs
  • Making a Pull Request
Nighres
  • Docs »
  • Brain
  • Edit on GitHub

BrainΒΆ

  • dots_segmentation
  • extract_brain_region
  • filter_stacking
  • intensity_based_skullstripping
  • mgdm_segmentation
  • mp2rage_dura_estimation
  • mp2rage_skullstripping
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