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Getting started

  • Installing Nighres
  • Nighres usage examples
    • Tissue classification from MP2RAGE data
    • Vascular Reconstruction
    • Brain co-registration from MP2RAGE data
    • Cortical depth estimation from MGDM segmentation
    • Subcortex Parcellation
    • DOTS white matter segmentation
    • Multiatlas Segmentation

Modules and Functions

  • Brain
  • Cortex
  • Data
  • Filtering
  • Intensity
  • Input/Output
  • Laminar
  • Microscopy
  • Registration
  • Segmentation
  • Shape
  • Statistics
  • Surface

Good to know

  • Data handling and formats
  • Saving outputs
  • Levelsets

Developer's guide

  • Overview
  • Setting up
  • Wrapping an existing CBS Tools class
  • Adding a new Python function
  • Writing examples
  • Adapting the docs
  • Making a Pull Request
Nighres
  • Docs »
  • Nighres usage examples
  • Edit on GitHub

Nighres usage examplesΒΆ

Tissue classification from MP2RAGE data

Tissue classification from MP2RAGE data

Vascular Reconstruction

Vascular Reconstruction

Brain co-registration from MP2RAGE data

Brain co-registration from MP2RAGE data

Cortical depth estimation from MGDM segmentation

Cortical depth estimation from MGDM segmentation

Subcortex Parcellation

Subcortex Parcellation

DOTS white matter segmentation

DOTS white matter segmentation

Multiatlas Segmentation

Multiatlas Segmentation

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