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Getting started

  • Installing Nighres
  • Nighres usage examples

Modules and Functions

  • Brain
  • Cortex
  • Data
  • Filtering
  • Intensity
  • Input/Output
  • Laminar
  • Microscopy
  • Registration
    • apply_coordinate_mappings
    • apply_coordinate_mappings_2d
    • embedded_antsreg
    • embedded_antsreg_2d
    • embedded_antsreg_multi
    • generate_coordinate_mapping
    • simple_align
  • Segmentation
  • Shape
  • Statistics
  • Surface

Good to know

  • Data handling and formats
  • Saving outputs
  • Levelsets

Developer's guide

  • Overview
  • Setting up
  • Wrapping an existing CBS Tools class
  • Adding a new Python function
  • Writing examples
  • Adapting the docs
  • Making a Pull Request
Nighres
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RegistrationΒΆ

  • apply_coordinate_mappings
  • apply_coordinate_mappings_2d
  • embedded_antsreg
  • embedded_antsreg_2d
  • embedded_antsreg_multi
  • generate_coordinate_mapping
  • simple_align
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